small script adjustments to make the cluster happy
This commit is contained in:
parent
27ed3caf0b
commit
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1
.gitignore
vendored
1
.gitignore
vendored
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@ -5,3 +5,4 @@ target/
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scripts/__pycache__
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acyclic
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output-*
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all.csv
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@ -21,38 +21,41 @@ def run():
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out = []
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# Using glob to match all .json files
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for file_path in glob.glob(os.path.join(folder_path, "*.json")):
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# Open and read the contents of the file
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with open(file_path, "r", encoding="utf-8") as json_file:
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(
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_ident,
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atom_count,
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assumption_ratio,
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max_rules_per_head,
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max_rule_size,
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_idx,
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) = file_path.split("_")
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data = json.load(json_file)["results"]
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aba2sat, aspforaba = (
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(data[0], data[1])
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if (
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data[0]["command"] == "aba2sat"
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and data[1]["command"] == "aspforaba"
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try:
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# Open and read the contents of the file
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with open(file_path, "r", encoding="utf-8") as json_file:
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(
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_ident,
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atom_count,
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assumption_ratio,
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max_rules_per_head,
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max_rule_size,
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_idx,
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) = file_path.split("_")
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data = json.load(json_file)["results"]
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aba2sat, aspforaba = (
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(data[0], data[1])
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if (
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data[0]["command"] == "aba2sat"
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and data[1]["command"] == "aspforaba"
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)
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else (data[1], data[0])
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)
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else (data[1], data[0])
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)
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speedup = float(aspforaba['mean']) / float(aba2sat['mean'])
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out.append({
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"atom_count": atom_count,
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"assumption_ratio": assumption_ratio,
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"max_rules_per_head": max_rules_per_head,
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"max_rule_size": max_rule_size,
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"time": aba2sat["mean"],
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"stddev": aba2sat['stddev'],
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"speedup": speedup,
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})
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if count > 700:
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break
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count += 1
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speedup = float(aspforaba['mean']) / float(aba2sat['mean'])
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out.append({
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"atom_count": atom_count,
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"assumption_ratio": assumption_ratio,
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"max_rules_per_head": max_rules_per_head,
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"max_rule_size": max_rule_size,
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"time": aba2sat["mean"],
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"stddev": aba2sat['stddev'],
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"speedup": speedup,
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})
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if count > 700:
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break
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count += 1
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except Exception:
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print(f'Failed to read {file_path}. Skipping..')
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with open(output, 'w') as output_file:
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output_file.write
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writer = csv.DictWriter(output_file, fieldnames=out[0].keys())
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@ -3,12 +3,26 @@
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# Batch script to run on sc.uni-leipzig.de cluster, i used
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# sbatch -a "1-$(cat acyclic.list | wc -l)" ./scripts/sc-batch.sh
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# Somehow all paths used in spawned processes need to be absolute,
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# there's probably a good explanation, but I don't have it
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FILE_LIST=acyclic.list
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# Pick line `$SLURM_ARRAY_TASK_ID` from the FILE_LIST
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# This will probably cause issues if more processes are allocated
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# than lines in the FILE_LIST, but who knows
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file="$(pwd)/$(awk "NR == $SLURM_ARRAY_TASK_ID" "$FILE_LIST")"
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# Read the extra argument
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arg=$(cat "$file.asm")
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# Make sure we get all the data in one central place
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OUTPUT_DIR="$(pwd)/output"
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export OUTPUT_DIR
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./validate --file "$file" --arg "$arg" --time --problem dc-co
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# This assumes that `validate` accepts the --no-rm flag,
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# which is not a flag the script accepts, but recognized by
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# the default bundler `nix bundle .#validate` uses. Required here
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# to prevent the fastest process from cleaning the extracted
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# package. Slower processes or those allocated later *will* fail
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# without the flag
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./validate --no-rm // --file "$file" --arg "$arg" --time --problem dc-co
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@ -11,7 +11,7 @@ def read_and_visualize(csv_file):
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# Display the first few rows of the dataframe
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print(df.head())
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# Identify all the properties (assuming they are all columns except for 'runtime')
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# Identify all the properties (assuming they are all columns except for some timings)
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properties = [col for col in df.columns if col != 'speedup' and col != 'time' and col != 'stddev']
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# Pairplot to see general pairwise relationships, may help to understand the overall relationship between properties and runtime
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@ -22,21 +22,21 @@ def read_and_visualize(csv_file):
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# Create scatter plots for each property against runtime
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for prop in properties:
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plt.figure(figsize=(10, 6))
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sns.scatterplot(x=df[prop], y=df['runtime'])
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plt.title(f'Impact of {prop} on Runtime')
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sns.scatterplot(x=df[prop], y=df['speedup'])
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plt.title(f'Impact of {prop} on Speedup')
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plt.xlabel(prop)
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plt.ylabel('Runtime')
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plt.show()
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plt.ylabel('Speedup')
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# Create box plots for categorical properties if any (e.g., difficulty level or type) against runtime
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for prop in properties:
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if df[prop].dtype == 'object':
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plt.figure(figsize=(10, 6))
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sns.boxplot(x=df[prop], y=df['runtime'])
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plt.title(f'Impact of {prop} on Runtime')
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sns.boxplot(x=df[prop], y=df['speedup'])
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plt.title(f'Impact of {prop} on Speedup')
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plt.xlabel(prop)
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plt.ylabel('Runtime')
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plt.show()
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plt.ylabel('Speedup')
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plt.show()
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# Example usage
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csv_file = 'all.csv' # Replace with your actual CSV file path
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@ -4,70 +4,70 @@
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# best used through the bundled nix version `nix run .#validate`
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print_help_and_exit() {
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if [ -n "$1" ]; then
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printf "%s\n\n" "$1"
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fi
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printf "Usage: validate [OPTIONS] \n"
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printf "\n"
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printf "Options:\n"
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printf " --aspforaba\n"
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printf " Binary to use when calling aspforaba\n"
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printf " -p, --problem\n"
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printf " The problem to solve\n"
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printf " -a, --arg\n"
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printf " The additional argument for the problem\n"
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printf " -f, --file\n"
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printf " The file containing the problem in ABA format\n"
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printf " -t, --time\n"
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printf " Execute hyperfine to determine runtimes\n"
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printf " --files-from\n"
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printf " Use the following dir to read files, specify a single file with --file instead\n"
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exit 1
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if [ -n "$1" ]; then
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printf "%s\n\n" "$1"
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fi
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printf "Usage: validate [OPTIONS] \n"
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printf "\n"
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printf "Options:\n"
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printf " --aspforaba\n"
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printf " Binary to use when calling aspforaba\n"
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printf " -p, --problem\n"
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printf " The problem to solve\n"
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printf " -a, --arg\n"
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printf " The additional argument for the problem\n"
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printf " -f, --file\n"
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printf " The file containing the problem in ABA format\n"
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printf " -t, --time\n"
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printf " Execute hyperfine to determine runtimes\n"
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printf " --files-from\n"
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printf " Use the following dir to read files, specify a single file with --file instead\n"
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exit 1
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}
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format_time() {
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COMMAND="$1"
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FILE="$2"
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mean=$(jq ".results[] | select(.command == \"$COMMAND\") | (.mean * 1000)" "$FILE")
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stddev=$(jq ".results[] | select(.command == \"$COMMAND\") | (.stddev * 1000)" "$FILE")
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printf "%7.3f±%7.3fms" "$mean" "$stddev"
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COMMAND="$1"
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FILE="$2"
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mean=$(jq ".results[] | select(.command == \"$COMMAND\") | (.mean * 1000)" "$FILE")
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stddev=$(jq ".results[] | select(.command == \"$COMMAND\") | (.stddev * 1000)" "$FILE")
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printf "%7.3f±%7.3fms" "$mean" "$stddev"
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}
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run_dc_co() {
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OUTPUT_DIR=${OUTPUT_DIR:-$(mktemp -d)}
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mkdir -p "$OUTPUT_DIR"
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JSON_FILE="$OUTPUT_DIR/$(basename "$ABA_FILE")-hyperfine.json"
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# Restrict memory to 20GB
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ulimit -v 20000000
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if [ -z "$ADDITIONAL_ARG" ]; then
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print_help_and_exit "Parameter --arg is missing!"
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fi
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if [ -z "$ABA_FILE" ]; then
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print_help_and_exit "Parameter --file is missing!"
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fi
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printf "===== %s ==== " "$(basename "$ABA_FILE")"
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our_result=$("$ABA2SAT" --max-loops 0 --file "$ABA_FILE" dc-co --query "$ADDITIONAL_ARG" | tee "$OUTPUT_DIR/$(basename "$ABA_FILE")-aba2sat-result")
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other_result=$("$ASPFORABA" --file "$ABA_FILE" --problem DC-CO --query "$ADDITIONAL_ARG" | tee "$OUTPUT_DIR/$(basename "$ABA_FILE")-aspforaba-result")
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if [ "$our_result" != "$other_result" ]; then
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printf "❌\n"
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else
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printf "✅\n"
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fi
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printf "Argument: %s\n" "$ADDITIONAL_ARG"
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OUTPUT_DIR=${OUTPUT_DIR:-$(mktemp -d)}
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mkdir -p "$OUTPUT_DIR"
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JSON_FILE="$OUTPUT_DIR/$(basename "$ABA_FILE")-hyperfine.json"
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# Restrict memory to 20GB
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ulimit -v 20000000
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if [ -z "$ADDITIONAL_ARG" ]; then
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print_help_and_exit "Parameter --arg is missing!"
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fi
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if [ -z "$ABA_FILE" ]; then
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print_help_and_exit "Parameter --file is missing!"
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fi
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printf "===== %s ==== " "$(basename "$ABA_FILE")"
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our_result=$("$ABA2SAT" --max-loops 0 --file "$ABA_FILE" dc-co --query "$ADDITIONAL_ARG" | tee "$OUTPUT_DIR/$(basename "$ABA_FILE")-aba2sat-result")
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other_result=$("$ASPFORABA" --file "$ABA_FILE" --problem DC-CO --query "$ADDITIONAL_ARG" | tee "$OUTPUT_DIR/$(basename "$ABA_FILE")-aspforaba-result")
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if [ "$our_result" != "$other_result" ]; then
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printf "❌\n"
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else
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printf "✅\n"
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fi
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printf "Argument: %s\n" "$ADDITIONAL_ARG"
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if [ -n "$TIME_COMMANDS" ]; then
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$HYPERFINE --shell=none \
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--export-json "$JSON_FILE" \
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--command-name "aba2sat" \
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"$ABA2SAT --max-loops 0 --file \"$ABA_FILE\" dc-co --query \"$ADDITIONAL_ARG\"" \
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--command-name "aspforaba" \
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"$ASPFORABA --file \"$ABA_FILE\" --problem DC-CO --query \"$ADDITIONAL_ARG\"" 1>/dev/null 2>&1
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printf "Our: %3s %30s\n" "$our_result" "$(format_time "aba2sat" "$JSON_FILE")"
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printf "Their: %3s %30s\n" "$other_result" "$(format_time "aspforaba" "$JSON_FILE")"
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else
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printf "Our: %3s\n" "$our_result"
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printf "Their: %3s\n" "$other_result"
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fi
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if [ -n "$TIME_COMMANDS" ]; then
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$HYPERFINE --shell=none \
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--export-json "$JSON_FILE" \
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--command-name "aba2sat" \
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"$ABA2SAT --max-loops 0 --file \"$ABA_FILE\" dc-co --query \"$ADDITIONAL_ARG\"" \
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--command-name "aspforaba" \
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"$ASPFORABA --file \"$ABA_FILE\" --problem DC-CO --query \"$ADDITIONAL_ARG\"" 1>/dev/null 2>&1
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printf "Our: %3s %30s\n" "$our_result" "$(format_time "aba2sat" "$JSON_FILE")"
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printf "Their: %3s %30s\n" "$other_result" "$(format_time "aspforaba" "$JSON_FILE")"
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else
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printf "Our: %3s\n" "$our_result"
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printf "Their: %3s\n" "$other_result"
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fi
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}
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@ -83,82 +83,82 @@ ADDITIONAL_ARG=
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TIME_COMMANDS=
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while [[ $# -gt 0 ]]; do
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case $1 in
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-h | --help)
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print_help_and_exit
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;;
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--aspforaba)
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shift
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ASPFORABA=$1
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shift
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;;
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-p | --problem)
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shift
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PROBLEM=$1
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shift
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;;
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-f | --file)
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if [ -n "$ABA_FILE_DIR" ]; then
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print_help_and_exit "Parameters --file and --files-from cannot be mixed"
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fi
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shift
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ABA_FILE=$1
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shift
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;;
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--files-from)
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if [ -n "$ABA_FILE" ]; then
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print_help_and_exit "Parameters --file and --files-from cannot be mixed"
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fi
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if [ -n "$ADDITIONAL_ARG" ]; then
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print_help_and_exit "Parameters --arg and --files-from cannot be mixed"
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fi
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shift
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ABA_FILE_DIR=$1
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shift
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;;
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-a | --arg)
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if [ -n "$ABA_FILE_DIR" ]; then
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print_help_and_exit "Parameters --arg and --files-from cannot be mixed"
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fi
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shift
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ADDITIONAL_ARG=$1
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shift
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;;
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-t | --time)
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shift
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TIME_COMMANDS=yes
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;;
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--aba2sat)
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shift
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ABA2SAT=$1
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shift
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;;
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-*)
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echo "Unknown option $1"
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print_help_and_exit
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;;
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*)
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POSITIONAL_ARGS+=("$1") # save positional arg
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shift # past argument
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;;
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esac
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case $1 in
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-h | --help)
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print_help_and_exit ""
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;;
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--aspforaba)
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shift
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ASPFORABA=$1
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shift
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;;
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-p | --problem)
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shift
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PROBLEM=$1
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shift
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;;
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-f | --file)
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if [ -n "$ABA_FILE_DIR" ]; then
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print_help_and_exit "Parameters --file and --files-from cannot be mixed"
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fi
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shift
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ABA_FILE=$1
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shift
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;;
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--files-from)
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if [ -n "$ABA_FILE" ]; then
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print_help_and_exit "Parameters --file and --files-from cannot be mixed"
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fi
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if [ -n "$ADDITIONAL_ARG" ]; then
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print_help_and_exit "Parameters --arg and --files-from cannot be mixed"
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fi
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shift
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ABA_FILE_DIR=$1
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shift
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;;
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-a | --arg)
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if [ -n "$ABA_FILE_DIR" ]; then
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print_help_and_exit "Parameters --arg and --files-from cannot be mixed"
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fi
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shift
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ADDITIONAL_ARG=$1
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shift
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;;
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-t | --time)
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shift
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TIME_COMMANDS=yes
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;;
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--aba2sat)
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shift
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ABA2SAT=$1
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shift
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;;
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-*)
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echo "Unknown option $1"
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print_help_and_exit
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;;
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*)
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POSITIONAL_ARGS+=("$1") # save positional arg
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shift # past argument
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;;
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esac
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done
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set -- "${POSITIONAL_ARGS[@]}" # restore positional parameters
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case "$PROBLEM" in
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dc-co | DC-CO)
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if [ -n "$ABA_FILE_DIR" ]; then
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# run for every file found in the directory
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for file in "$ABA_FILE_DIR"/*."$ABA_FILE_EXT"; do
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ABA_FILE="$file" ADDITIONAL_ARG="$(cat "$file.asm")" run_dc_co
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done
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else
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# run for the single configured file
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run_dc_co
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fi
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;;
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*)
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print_help_and_exit "Problem $PROBLEM is not supported"
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;;
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dc-co | DC-CO)
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if [ -n "$ABA_FILE_DIR" ]; then
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# run for every file found in the directory
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for file in $(find "$ABA_FILE_DIR" -type f -iname "*.$ABA_FILE_EXT" | shuf); do
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ABA_FILE="$file" ADDITIONAL_ARG="$(cat "$file.asm")" run_dc_co
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done
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else
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# run for the single configured file
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run_dc_co
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fi
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;;
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*)
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print_help_and_exit "Problem $PROBLEM is not supported"
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;;
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esac
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